Health

LAPIS integrations

Connect LAPIS to any other app, or use it from your AI client over MCP. SARS-CoV-2 genomic sequences from public sources. Free, credential-less public API.

No account neededcov-spectrum.ethz.ch
13 actions

What the catalog holds today. Ask for anything missing and your agent reads the API documentation and adds it.

Build solutions, not workarounds.

What do you want to automate with LAPIS?

Ask the assistant

You'll sign in before anything runs. What you typed comes with you.

Connect your AI client

Give your AI client this address.

https://mcp.apiant.ai

One connection does both: ask your client to act in an app once, or have it build an automation that keeps running. Any client that takes a remote MCP server. Nothing to install. Create your free account, then sign in once in your browser.

Set it up in your client
Claude Code

Run this in the directory you want to work in.

claude mcp add --transport http -s project apiant-ai https://mcp.apiant.ai

Start Claude Code there, approve the server, and sign in in the browser page it opens.

Claude Code guide (opens in a new tab)
Claude, web and desktop

Open Customize, then Connectors, then Add custom connector, and paste the address. On Team and Enterprise an owner adds it first.

Setup guide (opens in a new tab)
Cursor

Add the address to your MCP configuration as a server URL. Cursor signs you in in your browser.

Setup guide (opens in a new tab)
Zed

Open Settings, then AI, then MCP Servers, then Add Server, then Add Remote Server.

Setup guide (opens in a new tab)
Codex and the ChatGPT desktop app

Open Settings, then MCP servers, then Add server, and choose Streamable HTTP. From the terminal, Codex takes the address with its own add command and then signs you in.

Setup guide (opens in a new tab)
Any other MCP client

Paste the address where the client asks for a remote MCP server URL, and name the server apiant-ai where it lets you. APIANT's skills reach the client over the same connection.

Setup guide (opens in a new tab)

Popular

LAPIS with the apps people pair it with most

Pair it

Connect LAPIS with another app

What your agent can do with LAPIS

Triggers and actions 13 actions

  • Action
    Find amino acid insertions

    Find amino acid insertions occurring among samples matching filter criteria.

  • Action
    Find amino acid mutations

    Find amino acid mutations occurring among samples matching filter criteria.

  • Action
    Find nucleotide insertions

    Find nucleotide insertions occurring among samples matching filter criteria.

  • Action
    Find nucleotide mutations

    Find nucleotide mutations occurring among samples matching filter criteria.

  • Action
    Find sample counts

    Query aggregated SARS-CoV-2 sample statistics (counts) filtered by fields like date, location, or lineage.

  • Action
    Find sample details

    Retrieve detailed per-sample metadata (collection date, location, lineage, host, etc.) matching filter criteria.

  • Action
    Get aligned amino acid sequences

    Retrieve aligned amino acid sequences (optionally for one gene) for samples matching filter criteria.

  • Action
    Get aligned nucleotide sequences

    Retrieve aligned nucleotide sequences for samples matching filter criteria.

  • Action
    Get lineage definition

    Retrieve the lineage tree/definition for a given lineage column.

  • Action
    Get most recent common ancestor

    Compute the most recent common ancestor (in mutation/lineage terms) for samples matching filter criteria.

  • Action
    Get phylogenetic subtree

    Retrieve a phylogenetic subtree for samples matching filter criteria.

  • Action
    Get reference genome

    Retrieve the reference genome (nucleotide/gene sequence) used by this LAPIS instance.

  • Action
    Get unaligned nucleotide sequences

    Retrieve raw (unaligned) nucleotide sequences for samples matching filter criteria.

Related apps

More in Health

Reviews

What our customers say

Questions

LAPIS, answered

Is there a LAPIS MCP server?

APIANT's MCP server at https://mcp.apiant.ai works with LAPIS. Add that address to any AI client that takes a remote MCP server and sign in once in your browser. Your client can then run LAPIS actions on demand, or have APIANT build, test and run automations that use LAPIS. Nothing to install.

What can your agent do in LAPIS?

Any of LAPIS's 13 actions, including Find amino acid insertions, Find amino acid mutations, Find nucleotide insertions and Find nucleotide mutations. Your agent maps the data both ways and tests every scenario before it ships.

Can I use LAPIS directly from Claude, ChatGPT or Cursor?

Yes. Connect your AI client to APIANT once and it works with LAPIS two ways. Ask it to do something in LAPIS once and it runs that action on the spot. Ask for an automation and your agent builds it, tests every scenario and keeps it running on its own. A one-off action uses your plan's tasks the same way an automation step does.

Do I need to write code against the LAPIS API?

No. APIANT connects to the LAPIS API for you. Describe what you want in plain language and your agent builds it on the LAPIS triggers and actions in the catalog. If you need an endpoint that is not there yet, your agent reads the LAPIS API documentation and adds it.

Which apps can LAPIS connect to?

Any app in the catalog; the list on this page pairs LAPIS with each of them. If the other app is missing, point your agent at its API documentation and it builds the connector.

What happens when something fails?

Your agent works that out for you. It plans the failure paths along with the happy path, then tests every scenario before it ships.

Is there a free plan?

Yes. Every plan includes the agent, including free, and building from your own AI client spends no assistant credits.